Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.85■■■□□ 2.21
PCDHA1Q9Y5I3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA1Q9Y5I3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA1Q9Y5I3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
PCDHA1Q9Y5I3 RARRES2P2-201ENST00000394842 485 ntBASIC28.84■■■□□ 2.21
PCDHA1Q9Y5I3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 AC126177.7-201ENST00000547904 679 ntBASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.83■■■□□ 2.21
PCDHA1Q9Y5I3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
PCDHA1Q9Y5I3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.82■■■□□ 2.2
PCDHA1Q9Y5I3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.82■■■□□ 2.2
PCDHA1Q9Y5I3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
PCDHA1Q9Y5I3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
PCDHA1Q9Y5I3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
PCDHA1Q9Y5I3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
PCDHA1Q9Y5I3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
PCDHA1Q9Y5I3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PCDHA1Q9Y5I3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PCDHA1Q9Y5I3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
PCDHA1Q9Y5I3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PCDHA1Q9Y5I3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.78■■■□□ 2.2
PCDHA1Q9Y5I3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCDHA1Q9Y5I3 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCDHA1Q9Y5I3 AL359258.2-201ENST00000564063 1566 ntBASIC28.77■■■□□ 2.2
PCDHA1Q9Y5I3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.2
PCDHA1Q9Y5I3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCDHA1Q9Y5I3 AC092296.2-201ENST00000589470 999 ntBASIC28.76■■■□□ 2.19
PCDHA1Q9Y5I3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
PCDHA1Q9Y5I3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCDHA1Q9Y5I3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PCDHA1Q9Y5I3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCDHA1Q9Y5I3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
PCDHA1Q9Y5I3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.72■■■□□ 2.19
PCDHA1Q9Y5I3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
PCDHA1Q9Y5I3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
PCDHA1Q9Y5I3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
PCDHA1Q9Y5I3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
PCDHA1Q9Y5I3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.7■■■□□ 2.19
PCDHA1Q9Y5I3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.19
PCDHA1Q9Y5I3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
PCDHA1Q9Y5I3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
PCDHA1Q9Y5I3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PCDHA1Q9Y5I3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.69■■■□□ 2.18
PCDHA1Q9Y5I3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.69■■■□□ 2.18
PCDHA1Q9Y5I3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
PCDHA1Q9Y5I3 ECEL1P2-201ENST00000461596 1295 ntBASIC28.68■■■□□ 2.18
PCDHA1Q9Y5I3 AL157400.5-201ENST00000507624 621 ntBASIC28.68■■■□□ 2.18
PCDHA1Q9Y5I3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
PCDHA1Q9Y5I3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.68■■■□□ 2.18
PCDHA1Q9Y5I3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCDHA1Q9Y5I3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.67■■■□□ 2.18
PCDHA1Q9Y5I3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
PCDHA1Q9Y5I3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC28.66■■■□□ 2.18
PCDHA1Q9Y5I3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCDHA1Q9Y5I3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PCDHA1Q9Y5I3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
PCDHA1Q9Y5I3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 ABHD17AP5-201ENST00000580133 923 ntBASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 LINC01003-201ENST00000564834 1764 ntBASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
PCDHA1Q9Y5I3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
PCDHA1Q9Y5I3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.63■■■□□ 2.17
PCDHA1Q9Y5I3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
PCDHA1Q9Y5I3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
PCDHA1Q9Y5I3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.63■■■□□ 2.17
PCDHA1Q9Y5I3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCDHA1Q9Y5I3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.62■■■□□ 2.17
PCDHA1Q9Y5I3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.62■■■□□ 2.17
PCDHA1Q9Y5I3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.62■■■□□ 2.17
PCDHA1Q9Y5I3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PCDHA1Q9Y5I3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
PCDHA1Q9Y5I3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
PCDHA1Q9Y5I3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
PCDHA1Q9Y5I3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PCDHA1Q9Y5I3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
PCDHA1Q9Y5I3 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
PCDHA1Q9Y5I3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
PCDHA1Q9Y5I3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
PCDHA1Q9Y5I3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
PCDHA1Q9Y5I3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
PCDHA1Q9Y5I3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.59■■■□□ 2.17
PCDHA1Q9Y5I3 WHAMMP3-201ENST00000611636 1609 ntBASIC28.58■■■□□ 2.17
PCDHA1Q9Y5I3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.58■■■□□ 2.17
PCDHA1Q9Y5I3 AC142086.6-201ENST00000621154 1765 ntBASIC28.57■■■□□ 2.16
PCDHA1Q9Y5I3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
PCDHA1Q9Y5I3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
PCDHA1Q9Y5I3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
PCDHA1Q9Y5I3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.56■■■□□ 2.16
PCDHA1Q9Y5I3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
PCDHA1Q9Y5I3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.55■■■□□ 2.16
PCDHA1Q9Y5I3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
PCDHA1Q9Y5I3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC28.55■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms