Protein–RNA interactions for Protein: Q99616

CCL13, C-C motif chemokine 13, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL13Q99616 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL13Q99616 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL13Q99616 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
CCL13Q99616 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCL13Q99616 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCL13Q99616 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.89■□□□□ 0.93
CCL13Q99616 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCL13Q99616 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.88■□□□□ 0.93
CCL13Q99616 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCL13Q99616 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.88■□□□□ 0.93
CCL13Q99616 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCL13Q99616 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCL13Q99616 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.87■□□□□ 0.93
CCL13Q99616 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCL13Q99616 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCL13Q99616 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.87■□□□□ 0.93
CCL13Q99616 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.87■□□□□ 0.93
CCL13Q99616 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCL13Q99616 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCL13Q99616 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCL13Q99616 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCL13Q99616 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCL13Q99616 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CCL13Q99616 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL13Q99616 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL13Q99616 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CCL13Q99616 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCL13Q99616 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL13Q99616 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.84■□□□□ 0.93
CCL13Q99616 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL13Q99616 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL13Q99616 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCL13Q99616 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
CCL13Q99616 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.84■□□□□ 0.93
CCL13Q99616 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL13Q99616 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL13Q99616 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL13Q99616 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL13Q99616 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL13Q99616 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL13Q99616 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.83■□□□□ 0.93
CCL13Q99616 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CCL13Q99616 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCL13Q99616 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCL13Q99616 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.82■□□□□ 0.92
CCL13Q99616 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCL13Q99616 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCL13Q99616 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCL13Q99616 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.81■□□□□ 0.92
CCL13Q99616 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.81■□□□□ 0.92
CCL13Q99616 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.81■□□□□ 0.92
CCL13Q99616 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.81■□□□□ 0.92
CCL13Q99616 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCL13Q99616 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCL13Q99616 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.8■□□□□ 0.92
CCL13Q99616 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.8■□□□□ 0.92
CCL13Q99616 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCL13Q99616 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCL13Q99616 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCL13Q99616 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.79■□□□□ 0.92
CCL13Q99616 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCL13Q99616 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.78■□□□□ 0.92
CCL13Q99616 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.78■□□□□ 0.92
CCL13Q99616 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.78■□□□□ 0.92
CCL13Q99616 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCL13Q99616 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCL13Q99616 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL13Q99616 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.77■□□□□ 0.92
CCL13Q99616 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.77■□□□□ 0.92
CCL13Q99616 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL13Q99616 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.77■□□□□ 0.92
CCL13Q99616 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCL13Q99616 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCL13Q99616 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CCL13Q99616 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCL13Q99616 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL13Q99616 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CCL13Q99616 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
CCL13Q99616 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCL13Q99616 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CCL13Q99616 WHAMMP3-201ENST00000611636 1609 ntBASIC20.76■□□□□ 0.91
CCL13Q99616 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL13Q99616 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms