Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGCS1Q01581 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS1Q01581 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS1Q01581 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGCS1Q01581 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
HMGCS1Q01581 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.98■■□□□ 1.43
HMGCS1Q01581 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS1Q01581 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.98■■□□□ 1.43
HMGCS1Q01581 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS1Q01581 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS1Q01581 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS1Q01581 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
HMGCS1Q01581 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.96■■□□□ 1.43
HMGCS1Q01581 AL449106.1-201ENST00000608517 1980 ntBASIC23.96■■□□□ 1.43
HMGCS1Q01581 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGCS1Q01581 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
HMGCS1Q01581 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
HMGCS1Q01581 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.95■■□□□ 1.43
HMGCS1Q01581 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
HMGCS1Q01581 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.95■■□□□ 1.42
HMGCS1Q01581 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HMGCS1Q01581 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.95■■□□□ 1.42
HMGCS1Q01581 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.95■■□□□ 1.42
HMGCS1Q01581 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS1Q01581 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
HMGCS1Q01581 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS1Q01581 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS1Q01581 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGCS1Q01581 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
HMGCS1Q01581 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
HMGCS1Q01581 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.93■■□□□ 1.42
HMGCS1Q01581 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.93■■□□□ 1.42
HMGCS1Q01581 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.93■■□□□ 1.42
HMGCS1Q01581 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.93■■□□□ 1.42
HMGCS1Q01581 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
HMGCS1Q01581 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.92■■□□□ 1.42
HMGCS1Q01581 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.92■■□□□ 1.42
HMGCS1Q01581 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.92■■□□□ 1.42
HMGCS1Q01581 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
HMGCS1Q01581 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.91■■□□□ 1.42
HMGCS1Q01581 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS1Q01581 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
HMGCS1Q01581 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
HMGCS1Q01581 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS1Q01581 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS1Q01581 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS1Q01581 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.89■■□□□ 1.41
HMGCS1Q01581 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.89■■□□□ 1.41
HMGCS1Q01581 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGCS1Q01581 AP004609.3-201ENST00000610705 1884 ntBASIC23.88■■□□□ 1.41
HMGCS1Q01581 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGCS1Q01581 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGCS1Q01581 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGCS1Q01581 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
HMGCS1Q01581 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.88■■□□□ 1.41
HMGCS1Q01581 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGCS1Q01581 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGCS1Q01581 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
HMGCS1Q01581 LINC01971-201ENST00000617888 1048 ntBASIC23.87■■□□□ 1.41
HMGCS1Q01581 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGCS1Q01581 AC091060.1-201ENST00000623524 1766 ntBASIC23.86■■□□□ 1.41
HMGCS1Q01581 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.86■■□□□ 1.41
HMGCS1Q01581 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HMGCS1Q01581 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HMGCS1Q01581 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
HMGCS1Q01581 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.85■■□□□ 1.41
HMGCS1Q01581 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.85■■□□□ 1.41
HMGCS1Q01581 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.85■■□□□ 1.41
HMGCS1Q01581 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGCS1Q01581 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGCS1Q01581 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
HMGCS1Q01581 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGCS1Q01581 WHAMMP3-201ENST00000611636 1609 ntBASIC23.83■■□□□ 1.41
HMGCS1Q01581 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS1Q01581 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGCS1Q01581 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGCS1Q01581 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.81■■□□□ 1.4
HMGCS1Q01581 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS1Q01581 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.8■■□□□ 1.4
HMGCS1Q01581 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
HMGCS1Q01581 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGCS1Q01581 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L13-201ENST00000554103 1267 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L15-201ENST00000611059 1267 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L23-201ENST00000615195 1269 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L24-201ENST00000617576 1269 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L22-201ENST00000618238 1269 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L20-201ENST00000619712 1269 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L21-201ENST00000622058 1269 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L10-201ENST00000622460 1267 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 DUX4L25-201ENST00000624915 1269 ntBASIC23.79■■□□□ 1.4
HMGCS1Q01581 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
HMGCS1Q01581 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
HMGCS1Q01581 ABHD17AP4-201ENST00000411545 909 ntBASIC23.78■■□□□ 1.4
HMGCS1Q01581 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.78■■□□□ 1.4
HMGCS1Q01581 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS1Q01581 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
HMGCS1Q01581 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS1Q01581 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HMGCS1Q01581 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms