Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CX3CL1P78423 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CX3CL1P78423 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CX3CL1P78423 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CX3CL1P78423 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CX3CL1P78423 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.97■□□□□ 0.79
CX3CL1P78423 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CX3CL1P78423 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.97■□□□□ 0.79
CX3CL1P78423 CR559946.2-201ENST00000623684 991 ntBASIC19.97■□□□□ 0.79
CX3CL1P78423 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CX3CL1P78423 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CX3CL1P78423 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CX3CL1P78423 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CX3CL1P78423 MIR3648-2-201ENST00000581792 180 ntBASIC19.96■□□□□ 0.79
CX3CL1P78423 MIR3648-1-201ENST00000615959 180 ntBASIC19.96■□□□□ 0.79
CX3CL1P78423 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.96■□□□□ 0.79
CX3CL1P78423 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CX3CL1P78423 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CX3CL1P78423 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CX3CL1P78423 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CX3CL1P78423 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CX3CL1P78423 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.95■□□□□ 0.78
CX3CL1P78423 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.95■□□□□ 0.78
CX3CL1P78423 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.95■□□□□ 0.78
CX3CL1P78423 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CX3CL1P78423 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CX3CL1P78423 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CX3CL1P78423 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CX3CL1P78423 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CX3CL1P78423 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CX3CL1P78423 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CX3CL1P78423 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CX3CL1P78423 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CX3CL1P78423 AC008813.1-201ENST00000536597 885 ntBASIC19.92■□□□□ 0.78
CX3CL1P78423 AC016575.1-201ENST00000607026 382 ntBASIC19.92■□□□□ 0.78
CX3CL1P78423 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CX3CL1P78423 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CX3CL1P78423 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CX3CL1P78423 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CX3CL1P78423 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.91■□□□□ 0.78
CX3CL1P78423 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CX3CL1P78423 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CX3CL1P78423 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CX3CL1P78423 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CX3CL1P78423 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CX3CL1P78423 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CX3CL1P78423 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CX3CL1P78423 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CX3CL1P78423 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CX3CL1P78423 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CL1P78423 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.88■□□□□ 0.77
CX3CL1P78423 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CL1P78423 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.88■□□□□ 0.77
CX3CL1P78423 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CL1P78423 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.88■□□□□ 0.77
CX3CL1P78423 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CL1P78423 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CL1P78423 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CL1P78423 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CL1P78423 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CL1P78423 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CX3CL1P78423 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CL1P78423 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CL1P78423 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
CX3CL1P78423 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.85■□□□□ 0.77
CX3CL1P78423 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.85■□□□□ 0.77
CX3CL1P78423 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CX3CL1P78423 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CL1P78423 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CL1P78423 HLA-V-202ENST00000446817 847 ntBASIC19.84■□□□□ 0.77
CX3CL1P78423 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CX3CL1P78423 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.84■□□□□ 0.77
CX3CL1P78423 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CX3CL1P78423 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.84■□□□□ 0.77
CX3CL1P78423 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CX3CL1P78423 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.83■□□□□ 0.77
CX3CL1P78423 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.83■□□□□ 0.77
CX3CL1P78423 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
CX3CL1P78423 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CL1P78423 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CL1P78423 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CX3CL1P78423 AC148477.6-201ENST00000623746 465 ntBASIC19.82■□□□□ 0.76
CX3CL1P78423 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CX3CL1P78423 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CL1P78423 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.82■□□□□ 0.76
CX3CL1P78423 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CL1P78423 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CX3CL1P78423 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CX3CL1P78423 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CX3CL1P78423 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CX3CL1P78423 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.81■□□□□ 0.76
CX3CL1P78423 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.81■□□□□ 0.76
CX3CL1P78423 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CX3CL1P78423 MIR219A2-201ENST00000608502 1504 ntBASIC19.81■□□□□ 0.76
CX3CL1P78423 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CX3CL1P78423 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CX3CL1P78423 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CX3CL1P78423 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CX3CL1P78423 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.8■□□□□ 0.76
CX3CL1P78423 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms