Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
UPK1AO00322 AC091060.1-201ENST00000623524 1766 ntBASIC23.66■■□□□ 1.38
UPK1AO00322 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UPK1AO00322 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UPK1AO00322 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.66■■□□□ 1.38
UPK1AO00322 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UPK1AO00322 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UPK1AO00322 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UPK1AO00322 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UPK1AO00322 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
UPK1AO00322 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.64■■□□□ 1.38
UPK1AO00322 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.64■■□□□ 1.38
UPK1AO00322 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UPK1AO00322 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.64■■□□□ 1.37
UPK1AO00322 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
UPK1AO00322 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.37
UPK1AO00322 AC110285.7-201ENST00000624417 1536 ntBASIC23.64■■□□□ 1.37
UPK1AO00322 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
UPK1AO00322 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UPK1AO00322 LINC01971-201ENST00000617888 1048 ntBASIC23.63■■□□□ 1.37
UPK1AO00322 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UPK1AO00322 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UPK1AO00322 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPK1AO00322 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.62■■□□□ 1.37
UPK1AO00322 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
UPK1AO00322 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.61■■□□□ 1.37
UPK1AO00322 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
UPK1AO00322 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
UPK1AO00322 AC018358.1-201ENST00000631079 1402 ntBASIC23.6■■□□□ 1.37
UPK1AO00322 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.6■■□□□ 1.37
UPK1AO00322 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.6■■□□□ 1.37
UPK1AO00322 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.6■■□□□ 1.37
UPK1AO00322 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
UPK1AO00322 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
UPK1AO00322 ZNRF2P2-203ENST00000454624 420 ntBASIC23.59■■□□□ 1.37
UPK1AO00322 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
UPK1AO00322 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPK1AO00322 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.58■■□□□ 1.37
UPK1AO00322 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.58■■□□□ 1.37
UPK1AO00322 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPK1AO00322 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPK1AO00322 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPK1AO00322 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.58■■□□□ 1.36
UPK1AO00322 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
UPK1AO00322 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
UPK1AO00322 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
UPK1AO00322 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
UPK1AO00322 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
UPK1AO00322 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.56■■□□□ 1.36
UPK1AO00322 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.56■■□□□ 1.36
UPK1AO00322 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
UPK1AO00322 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.56■■□□□ 1.36
UPK1AO00322 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
UPK1AO00322 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.55■■□□□ 1.36
UPK1AO00322 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.55■■□□□ 1.36
UPK1AO00322 ABHD17AP4-201ENST00000411545 909 ntBASIC23.55■■□□□ 1.36
UPK1AO00322 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPK1AO00322 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPK1AO00322 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPK1AO00322 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPK1AO00322 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.53■■□□□ 1.36
UPK1AO00322 DUX4L11-201ENST00000611504 1267 ntBASIC23.53■■□□□ 1.36
UPK1AO00322 DUX4L12-201ENST00000614593 1267 ntBASIC23.53■■□□□ 1.36
UPK1AO00322 DUX4L14-201ENST00000621227 1267 ntBASIC23.53■■□□□ 1.36
UPK1AO00322 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UPK1AO00322 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
UPK1AO00322 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L13-201ENST00000554103 1267 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L15-201ENST00000611059 1267 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L23-201ENST00000615195 1269 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L24-201ENST00000617576 1269 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L22-201ENST00000618238 1269 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L20-201ENST00000619712 1269 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L21-201ENST00000622058 1269 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L10-201ENST00000622460 1267 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 DUX4L25-201ENST00000624915 1269 ntBASIC23.52■■□□□ 1.36
UPK1AO00322 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
UPK1AO00322 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
UPK1AO00322 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
UPK1AO00322 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
UPK1AO00322 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
UPK1AO00322 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.51■■□□□ 1.35
UPK1AO00322 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
UPK1AO00322 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
UPK1AO00322 AC020928.2-201ENST00000588717 2197 ntBASIC23.5■■□□□ 1.35
UPK1AO00322 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
UPK1AO00322 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
UPK1AO00322 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
UPK1AO00322 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.49■■□□□ 1.35
UPK1AO00322 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
UPK1AO00322 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
UPK1AO00322 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
UPK1AO00322 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms