Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHB3Q9Y5E6 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 AL031133.1-201ENST00000406807 723 ntBASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 STK33P1-201ENST00000423835 1218 ntBASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHB3Q9Y5E6 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 AP000523.1-201ENST00000398242 1049 ntBASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 AP000550.4-202ENST00000639755 178 ntBASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 MYC-208ENST00000641036 567 ntBASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 ANO7L1-203ENST00000602586 1720 ntBASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 PCDHB18P-201ENST00000524813 2368 ntBASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHB3Q9Y5E6 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 AC011558.1-201ENST00000623459 338 ntBASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 AC083906.6-201ENST00000641366 219 ntBASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PCDHB3Q9Y5E6 KRT8P45-201ENST00000414328 1447 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms