Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 MIR4674-201ENST00000582457 87 ntBASIC16.49■□□□□ 0.23
VSX1Q9NZR4 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 AC135776.1-201ENST00000319817 2481 ntBASIC16.48■□□□□ 0.23
VSX1Q9NZR4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 AC093677.2-201ENST00000600169 1863 ntBASIC16.48■□□□□ 0.23
VSX1Q9NZR4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 PKD1P1-201ENST00000458669 6805 ntBASIC16.48■□□□□ 0.23
VSX1Q9NZR4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 KRT8P50-201ENST00000562022 1438 ntBASIC16.48■□□□□ 0.23
VSX1Q9NZR4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 MIR718-201ENST00000390190 70 ntBASIC16.48■□□□□ 0.23
VSX1Q9NZR4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 NOC2LP2-201ENST00000407594 1944 ntBASIC16.48■□□□□ 0.23
VSX1Q9NZR4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX1Q9NZR4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 UNC93B2-201ENST00000285383 730 ntBASIC16.47■□□□□ 0.23
VSX1Q9NZR4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SLC25A1P2-201ENST00000430693 912 ntBASIC16.47■□□□□ 0.23
VSX1Q9NZR4 RBM17P1-201ENST00000453646 1190 ntBASIC16.47■□□□□ 0.23
VSX1Q9NZR4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 AC008550.1-201ENST00000511500 884 ntBASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 AL023803.3-201ENST00000615559 522 ntBASIC16.47■□□□□ 0.23
VSX1Q9NZR4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
VSX1Q9NZR4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms