Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MKS1Q9NXB0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 AC011270.2-201ENST00000624293 2550 ntBASIC18.22■□□□□ 0.51
MKS1Q9NXB0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 MCCD1P1-208ENST00000445732 328 ntBASIC18.22■□□□□ 0.51
MKS1Q9NXB0 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MKS1Q9NXB0 SDHAP2-201ENST00000455183 2001 ntBASIC18.22■□□□□ 0.51
MKS1Q9NXB0 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MKS1Q9NXB0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
MKS1Q9NXB0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
MKS1Q9NXB0 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
MKS1Q9NXB0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 GPAT2P1-201ENST00000444924 1672 ntBASIC18.2■□□□□ 0.5
MKS1Q9NXB0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 AC108860.2-201ENST00000562760 2183 ntBASIC18.2■□□□□ 0.5
MKS1Q9NXB0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MKS1Q9NXB0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 MIR149-201ENST00000384879 89 ntBASIC18.19■□□□□ 0.5
MKS1Q9NXB0 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 AC009102.3-201ENST00000623118 1491 ntBASIC18.19■□□□□ 0.5
MKS1Q9NXB0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MKS1Q9NXB0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms