Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 SEC1P-202ENST00000473944 940 ntBASIC19.79■□□□□ 0.76
SIX2Q9NPC8 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX2Q9NPC8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 AC026471.1-201ENST00000564629 3026 ntBASIC19.78■□□□□ 0.76
SIX2Q9NPC8 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 AC009947.2-201ENST00000444014 672 ntBASIC19.78■□□□□ 0.76
SIX2Q9NPC8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.78■□□□□ 0.76
SIX2Q9NPC8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 AL024508.2-201ENST00000607749 1894 ntBASIC19.77■□□□□ 0.76
SIX2Q9NPC8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 LETM1P2-201ENST00000597330 2178 ntBASIC19.77■□□□□ 0.76
SIX2Q9NPC8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 AC128688.1-201ENST00000487626 519 ntBASIC19.77■□□□□ 0.76
SIX2Q9NPC8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 AC010240.3-201ENST00000607688 395 ntBASIC19.77■□□□□ 0.76
SIX2Q9NPC8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX2Q9NPC8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SIX2Q9NPC8 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
SIX2Q9NPC8 PCDHB18P-201ENST00000524813 2368 ntBASIC19.77■□□□□ 0.75
SIX2Q9NPC8 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
SIX2Q9NPC8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX2Q9NPC8 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms