Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 AL031598.1-201ENST00000561511 1773 ntBASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 AC009065.1-201ENST00000564055 1225 ntBASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 ANO7L1-203ENST00000602586 1720 ntBASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM39Q9HCM9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 AL031133.1-201ENST00000406807 723 ntBASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 AL671277.2-201ENST00000458060 996 ntBASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 HYMAI.1-201ENST00000620949 238 ntBASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRIM39Q9HCM9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.27■□□□□ 0.51
TRIM39Q9HCM9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM39Q9HCM9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM39Q9HCM9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
TRIM39Q9HCM9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 MYLKP1-201ENST00000509077 1580 ntBASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 AL163051.1-201ENST00000569214 1512 ntBASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM39Q9HCM9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms