Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RPAP3Q9H6T3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPAP3Q9H6T3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPAP3Q9H6T3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPAP3Q9H6T3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 AC079776.4-201ENST00000511039 504 ntBASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 BNIP3P18-201ENST00000593976 575 ntBASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPAP3Q9H6T3 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 AL022342.1-201ENST00000400363 863 ntBASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 AC113404.2-201ENST00000507884 177 ntBASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 AF238378.1-201ENST00000526806 358 ntBASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 AL662844.1-201ENST00000546340 181 ntBASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 MYLKP1-201ENST00000509077 1580 ntBASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
RPAP3Q9H6T3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 SDHAP2-201ENST00000455183 2001 ntBASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 POM121L3P-201ENST00000419331 1163 ntBASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP3Q9H6T3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 TSPY12P-201ENST00000421279 868 ntBASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP3Q9H6T3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms