Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 CD63-204ENST00000546939 779 ntTSL 3 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AC025062.2-201ENST00000605477 670 ntBASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AC116407.3-201ENST00000623905 1129 ntBASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AL161938.1-201ENST00000569833 2180 ntBASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC23.82■■□□□ 1.4
SHANK3Q9BYB0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 LBH-204ENST00000406087 559 ntTSL 4 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 AL139288.1-201ENST00000623748 933 ntBASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 PMS2P7-201ENST00000506558 1336 ntBASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 AC132008.2-207ENST00000454517 770 ntBASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK3Q9BYB0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 AC055717.3-201ENST00000622967 595 ntBASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 AC083906.6-201ENST00000641366 219 ntBASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHANK3Q9BYB0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 AC125634.1-201ENST00000438758 1403 ntBASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 AC099343.3-201ENST00000605834 2503 ntBASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 ABCD1P5-201ENST00000445663 754 ntBASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 AC008735.5-201ENST00000623544 497 ntBASIC23.79■■□□□ 1.4
SHANK3Q9BYB0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 AL032819.2-201ENST00000624543 2162 ntBASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms