Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 MIR3917-201ENST00000580971 93 ntBASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 AC010240.3-201ENST00000607688 395 ntBASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 AP000593.1-201ENST00000393668 712 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 SPDYE15P-201ENST00000424157 909 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 AC112907.2-201ENST00000448639 330 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 KRT18P41-201ENST00000518924 1277 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 AL157888.1-201ENST00000631930 593 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 MYC-208ENST00000641036 567 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 ANO7L1-203ENST00000602586 1720 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 AC112777.1-201ENST00000540175 1423 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 KRT8P50-201ENST00000562022 1438 ntBASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD1Q96NR3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.37■□□□□ 0.37
PTCHD1Q96NR3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AC093525.10-201ENST00000625130 1569 ntBASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 AL499627.1-201ENST00000569373 2188 ntBASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD1Q96NR3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms