Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 KRT17P6-201ENST00000453795 1220 ntBASIC17.95■□□□□ 0.46
LMX1AQ8TE12 VENTXP7-201ENST00000475503 772 ntBASIC17.95■□□□□ 0.46
LMX1AQ8TE12 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.95■□□□□ 0.46
LMX1AQ8TE12 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 KRT89P-201ENST00000620027 1478 ntBASIC17.95■□□□□ 0.46
LMX1AQ8TE12 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 AC099343.3-201ENST00000605834 2503 ntBASIC17.94■□□□□ 0.46
LMX1AQ8TE12 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1AQ8TE12 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 RN7SL606P-201ENST00000472779 293 ntBASIC17.93■□□□□ 0.46
LMX1AQ8TE12 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 AC004263.2-201ENST00000617183 678 ntBASIC17.93■□□□□ 0.46
LMX1AQ8TE12 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 AC005332.7-201ENST00000614046 2005 ntBASIC17.93■□□□□ 0.46
LMX1AQ8TE12 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LMX1AQ8TE12 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 KRT8P10-201ENST00000450021 1447 ntBASIC17.92■□□□□ 0.46
LMX1AQ8TE12 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LMX1AQ8TE12 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms