Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.37■□□□□ 0.69
LIG3P49916 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 AP000525.1-201ENST00000608286 694 ntBASIC19.37■□□□□ 0.69
LIG3P49916 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIG3P49916 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIG3P49916 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 AL031598.1-201ENST00000561511 1773 ntBASIC19.37■□□□□ 0.69
LIG3P49916 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIG3P49916 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LIG3P49916 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LIG3P49916 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
LIG3P49916 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
LIG3P49916 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.36■□□□□ 0.69
LIG3P49916 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.36■□□□□ 0.69
LIG3P49916 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.36■□□□□ 0.69
LIG3P49916 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.36■□□□□ 0.69
LIG3P49916 AL160286.2-201ENST00000567150 934 ntBASIC19.36■□□□□ 0.69
LIG3P49916 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.36■□□□□ 0.69
LIG3P49916 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.36■□□□□ 0.69
LIG3P49916 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIG3P49916 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LIG3P49916 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.35■□□□□ 0.69
LIG3P49916 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.35■□□□□ 0.69
LIG3P49916 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
LIG3P49916 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
LIG3P49916 AC211429.1-201ENST00000415277 523 ntBASIC19.35■□□□□ 0.69
LIG3P49916 AC087499.1-201ENST00000418141 1075 ntBASIC19.35■□□□□ 0.69
LIG3P49916 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.35■□□□□ 0.69
LIG3P49916 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
LIG3P49916 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.35■□□□□ 0.69
LIG3P49916 AC141586.5-201ENST00000624546 2050 ntBASIC19.35■□□□□ 0.69
LIG3P49916 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.35■□□□□ 0.69
LIG3P49916 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 RCC2P6-201ENST00000526625 1557 ntBASIC19.35■□□□□ 0.69
LIG3P49916 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIG3P49916 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.34■□□□□ 0.69
LIG3P49916 BCL2-203ENST00000589955 5011 ntBASIC19.34■□□□□ 0.69
LIG3P49916 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.34■□□□□ 0.69
LIG3P49916 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
LIG3P49916 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 MMP23A-201ENST00000234610 1017 ntBASIC19.34■□□□□ 0.69
LIG3P49916 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.34■□□□□ 0.69
LIG3P49916 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.34■□□□□ 0.69
LIG3P49916 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.34■□□□□ 0.69
LIG3P49916 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.34■□□□□ 0.69
LIG3P49916 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.34■□□□□ 0.69
LIG3P49916 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.34■□□□□ 0.69
LIG3P49916 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms