Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.35■□□□□ 0.37
RFX3P48380 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.35■□□□□ 0.37
RFX3P48380 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX3P48380 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RFX3P48380 AC008556.1-201ENST00000610908 2040 ntBASIC17.35■□□□□ 0.37
RFX3P48380 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RFX3P48380 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX3P48380 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX3P48380 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RFX3P48380 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
RFX3P48380 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX3P48380 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
RFX3P48380 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX3P48380 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
RFX3P48380 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX3P48380 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX3P48380 MCCD1P1-208ENST00000445732 328 ntBASIC17.34■□□□□ 0.37
RFX3P48380 CCR12P-201ENST00000446203 998 ntBASIC17.34■□□□□ 0.37
RFX3P48380 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX3P48380 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX3P48380 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX3P48380 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX3P48380 NAPSB-206ENST00000562112 1266 ntBASIC17.34■□□□□ 0.37
RFX3P48380 AL499627.1-201ENST00000569373 2188 ntBASIC17.34■□□□□ 0.37
RFX3P48380 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
RFX3P48380 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX3P48380 AC068587.9-201ENST00000641814 219 ntBASIC17.34■□□□□ 0.37
RFX3P48380 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX3P48380 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFX3P48380 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
RFX3P48380 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFX3P48380 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.33■□□□□ 0.37
RFX3P48380 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.33■□□□□ 0.37
RFX3P48380 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.33■□□□□ 0.37
RFX3P48380 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.33■□□□□ 0.37
RFX3P48380 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.33■□□□□ 0.37
RFX3P48380 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RFX3P48380 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.33■□□□□ 0.37
RFX3P48380 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
RFX3P48380 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFX3P48380 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RFX3P48380 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
RFX3P48380 CYP2D8P-201ENST00000433633 1490 ntBASIC17.33■□□□□ 0.37
RFX3P48380 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RFX3P48380 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.33■□□□□ 0.36
RFX3P48380 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
RFX3P48380 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX3P48380 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.33■□□□□ 0.36
RFX3P48380 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
RFX3P48380 AL357033.4-201ENST00000617703 1807 ntBASIC17.33■□□□□ 0.36
RFX3P48380 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
RFX3P48380 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 AC093525.10-201ENST00000625130 1569 ntBASIC17.32■□□□□ 0.36
RFX3P48380 MTMR9LP-203ENST00000426597 1545 ntBASIC17.32■□□□□ 0.36
RFX3P48380 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX3P48380 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RFX3P48380 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX3P48380 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX3P48380 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RFX3P48380 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms