Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
CUX1P39880 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC30.82■■■□□ 2.52
CUX1P39880 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC30.82■■■□□ 2.52
CUX1P39880 RPSAP43-201ENST00000402237 625 ntBASIC30.82■■■□□ 2.52
CUX1P39880 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC30.82■■■□□ 2.52
CUX1P39880 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC30.82■■■□□ 2.52
CUX1P39880 AL691403.2-201ENST00000618460 490 ntBASIC30.82■■■□□ 2.52
CUX1P39880 AC083906.6-201ENST00000641366 219 ntBASIC30.82■■■□□ 2.52
CUX1P39880 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX1P39880 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX1P39880 ASL-204ENST00000395331 1538 ntTSL 5 BASIC30.81■■■□□ 2.52
CUX1P39880 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX1P39880 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC30.81■■■□□ 2.52
CUX1P39880 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC30.81■■■□□ 2.52
CUX1P39880 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
CUX1P39880 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX1P39880 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC30.81■■■□□ 2.52
CUX1P39880 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC30.81■■■□□ 2.52
CUX1P39880 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC30.81■■■□□ 2.52
CUX1P39880 AC027601.4-201ENST00000611259 610 ntBASIC30.81■■■□□ 2.52
CUX1P39880 AL139288.1-201ENST00000623748 933 ntBASIC30.81■■■□□ 2.52
CUX1P39880 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC30.81■■■□□ 2.52
CUX1P39880 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CUX1P39880 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
CUX1P39880 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CUX1P39880 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
CUX1P39880 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC30.8■■■□□ 2.52
CUX1P39880 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC30.8■■■□□ 2.52
CUX1P39880 UPF3AP3-201ENST00000420996 769 ntBASIC30.8■■■□□ 2.52
CUX1P39880 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC30.8■■■□□ 2.52
CUX1P39880 MTCL1P1-201ENST00000446207 792 ntBASIC30.8■■■□□ 2.52
CUX1P39880 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC30.8■■■□□ 2.52
CUX1P39880 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC30.8■■■□□ 2.52
CUX1P39880 AC008735.5-201ENST00000623544 497 ntBASIC30.8■■■□□ 2.52
CUX1P39880 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CUX1P39880 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CUX1P39880 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC30.79■■■□□ 2.52
CUX1P39880 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX1P39880 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX1P39880 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CUX1P39880 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC30.79■■■□□ 2.52
CUX1P39880 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
CUX1P39880 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CUX1P39880 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CUX1P39880 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CUX1P39880 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC30.79■■■□□ 2.52
CUX1P39880 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
CUX1P39880 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CUX1P39880 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX1P39880 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC30.78■■■□□ 2.52
CUX1P39880 YBX2P1-201ENST00000394192 760 ntBASIC30.78■■■□□ 2.52
CUX1P39880 RNA5SP415-201ENST00000517246 115 ntBASIC30.78■■■□□ 2.52
CUX1P39880 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC30.78■■■□□ 2.52
CUX1P39880 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CUX1P39880 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX1P39880 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CUX1P39880 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX1P39880 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX1P39880 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC30.78■■■□□ 2.52
CUX1P39880 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC30.78■■■□□ 2.52
CUX1P39880 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC30.78■■■□□ 2.52
CUX1P39880 AC092910.1-201ENST00000482027 1129 ntBASIC30.78■■■□□ 2.52
CUX1P39880 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
CUX1P39880 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC30.78■■■□□ 2.52
CUX1P39880 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX1P39880 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX1P39880 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC30.77■■■□□ 2.52
CUX1P39880 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX1P39880 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC30.77■■■□□ 2.52
CUX1P39880 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
CUX1P39880 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC30.77■■■□□ 2.52
CUX1P39880 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC30.77■■■□□ 2.52
CUX1P39880 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX1P39880 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC30.77■■■□□ 2.52
CUX1P39880 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX1P39880 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX1P39880 GGCT-205ENST00000409436 954 ntTSL 3 BASIC30.77■■■□□ 2.52
CUX1P39880 RAB17-203ENST00000409576 466 ntTSL 3 BASIC30.77■■■□□ 2.52
CUX1P39880 AL591424.1-201ENST00000442569 1213 ntBASIC30.77■■■□□ 2.52
CUX1P39880 OR7E14P-202ENST00000530490 1290 ntBASIC30.77■■■□□ 2.52
CUX1P39880 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC30.77■■■□□ 2.52
CUX1P39880 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC30.77■■■□□ 2.52
CUX1P39880 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC30.77■■■□□ 2.52
CUX1P39880 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CUX1P39880 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CUX1P39880 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
CUX1P39880 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.52
CUX1P39880 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
CUX1P39880 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC30.76■■■□□ 2.51
CUX1P39880 AC008687.5-201ENST00000593746 558 ntBASIC30.76■■■□□ 2.51
CUX1P39880 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
CUX1P39880 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC30.76■■■□□ 2.51
CUX1P39880 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC30.75■■■□□ 2.51
CUX1P39880 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 AC099343.3-201ENST00000605834 2503 ntBASIC30.75■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms