Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.61■□□□□ 0.41
MSX2P35548 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.61■□□□□ 0.41
MSX2P35548 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.61■□□□□ 0.41
MSX2P35548 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 OR6D1P-202ENST00000641007 5290 ntBASIC17.61■□□□□ 0.41
MSX2P35548 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.6■□□□□ 0.41
MSX2P35548 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX2P35548 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.6■□□□□ 0.41
MSX2P35548 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX2P35548 MYC-208ENST00000641036 567 ntBASIC17.6■□□□□ 0.41
MSX2P35548 KRT8P45-201ENST00000414328 1447 ntBASIC17.6■□□□□ 0.41
MSX2P35548 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.6■□□□□ 0.41
MSX2P35548 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX2P35548 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.6■□□□□ 0.41
MSX2P35548 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX2P35548 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
MSX2P35548 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
MSX2P35548 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX2P35548 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX2P35548 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX2P35548 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSX2P35548 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
MSX2P35548 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.58■□□□□ 0.41
MSX2P35548 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.58■□□□□ 0.41
MSX2P35548 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSX2P35548 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms