Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.95■□□□□ 0.46
HOXC4P09017 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC4P09017 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC4P09017 VENTXP7-201ENST00000475503 772 ntBASIC17.95■□□□□ 0.46
HOXC4P09017 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.95■□□□□ 0.46
HOXC4P09017 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HOXC4P09017 AP000867.3-201ENST00000524675 377 ntBASIC17.95■□□□□ 0.46
HOXC4P09017 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.95■□□□□ 0.46
HOXC4P09017 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC4P09017 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC4P09017 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.95■□□□□ 0.46
HOXC4P09017 CROCCP3-202ENST00000420820 1947 ntBASIC17.95■□□□□ 0.46
HOXC4P09017 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC4P09017 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC4P09017 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HOXC4P09017 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC4P09017 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HOXC4P09017 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HOXC4P09017 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HOXC4P09017 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.94■□□□□ 0.46
HOXC4P09017 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.94■□□□□ 0.46
HOXC4P09017 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC4P09017 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.94■□□□□ 0.46
HOXC4P09017 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.94■□□□□ 0.46
HOXC4P09017 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC4P09017 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 LINC01126-201ENST00000623515 1646 ntBASIC17.94■□□□□ 0.46
HOXC4P09017 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 BX323043.1-201ENST00000641006 1765 ntBASIC17.94■□□□□ 0.46
HOXC4P09017 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC4P09017 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC4P09017 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HOXC4P09017 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC4P09017 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
HOXC4P09017 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC4P09017 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HOXC4P09017 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC4P09017 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.93■□□□□ 0.46
HOXC4P09017 TSPY12P-201ENST00000421279 868 ntBASIC17.93■□□□□ 0.46
HOXC4P09017 IGHV3-47-201ENST00000425060 335 ntBASIC17.93■□□□□ 0.46
HOXC4P09017 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HOXC4P09017 KRT17P6-201ENST00000453795 1220 ntBASIC17.93■□□□□ 0.46
HOXC4P09017 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
HOXC4P09017 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC4P09017 AC104819.1-201ENST00000504587 486 ntBASIC17.93■□□□□ 0.46
HOXC4P09017 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.93■□□□□ 0.46
HOXC4P09017 AC011840.4-201ENST00000578471 627 ntBASIC17.93■□□□□ 0.46
HOXC4P09017 AC009154.2-201ENST00000621177 724 ntBASIC17.93■□□□□ 0.46
HOXC4P09017 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC4P09017 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HOXC4P09017 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC4P09017 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC4P09017 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HOXC4P09017 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
HOXC4P09017 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.92■□□□□ 0.46
HOXC4P09017 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.92■□□□□ 0.46
HOXC4P09017 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.92■□□□□ 0.46
HOXC4P09017 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
HOXC4P09017 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 TSPY19P-201ENST00000418461 509 ntBASIC17.92■□□□□ 0.46
HOXC4P09017 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HOXC4P09017 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC4P09017 TSPY18P-201ENST00000441642 509 ntBASIC17.92■□□□□ 0.46
HOXC4P09017 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms