Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 AL022342.1-201ENST00000400363 863 ntBASIC20.39■□□□□ 0.85
MMP3P08254 TSPY12P-201ENST00000421279 868 ntBASIC20.39■□□□□ 0.85
MMP3P08254 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP3P08254 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.39■□□□□ 0.85
MMP3P08254 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP3P08254 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP3P08254 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP3P08254 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.39■□□□□ 0.85
MMP3P08254 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
MMP3P08254 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.39■□□□□ 0.85
MMP3P08254 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP3P08254 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP3P08254 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.38■□□□□ 0.85
MMP3P08254 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
MMP3P08254 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.38■□□□□ 0.85
MMP3P08254 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.38■□□□□ 0.85
MMP3P08254 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.38■□□□□ 0.85
MMP3P08254 AC096582.2-201ENST00000510860 516 ntBASIC20.38■□□□□ 0.85
MMP3P08254 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.38■□□□□ 0.85
MMP3P08254 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 TP73-AS1-207ENST00000624167 988 ntBASIC20.38■□□□□ 0.85
MMP3P08254 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.38■□□□□ 0.85
MMP3P08254 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
MMP3P08254 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.38■□□□□ 0.85
MMP3P08254 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP3P08254 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 AC112777.1-201ENST00000540175 1423 ntBASIC20.37■□□□□ 0.85
MMP3P08254 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
MMP3P08254 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
MMP3P08254 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 AC079776.4-201ENST00000511039 504 ntBASIC20.37■□□□□ 0.85
MMP3P08254 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.37■□□□□ 0.85
MMP3P08254 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.37■□□□□ 0.85
MMP3P08254 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
MMP3P08254 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.37■□□□□ 0.85
MMP3P08254 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.37■□□□□ 0.85
MMP3P08254 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.37■□□□□ 0.85
MMP3P08254 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MMP3P08254 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.36■□□□□ 0.85
MMP3P08254 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.36■□□□□ 0.85
MMP3P08254 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.36■□□□□ 0.85
MMP3P08254 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.36■□□□□ 0.85
MMP3P08254 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
MMP3P08254 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
MMP3P08254 AC114341.1-201ENST00000618070 349 ntBASIC20.36■□□□□ 0.85
MMP3P08254 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
MMP3P08254 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MMP3P08254 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.36■□□□□ 0.85
MMP3P08254 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
MMP3P08254 AL499627.1-201ENST00000569373 2188 ntBASIC20.35■□□□□ 0.85
MMP3P08254 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MMP3P08254 HLA-A-201ENST00000376802 1334 ntBASIC20.35■□□□□ 0.85
MMP3P08254 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.35■□□□□ 0.85
MMP3P08254 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.35■□□□□ 0.85
MMP3P08254 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms