Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
LDB2O43679 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB2O43679 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB2O43679 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.45■□□□□ 0.54
LDB2O43679 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.45■□□□□ 0.54
LDB2O43679 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LDB2O43679 AC010240.3-201ENST00000607688 395 ntBASIC18.45■□□□□ 0.54
LDB2O43679 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB2O43679 AC007613.1-201ENST00000572811 2597 ntBASIC18.45■□□□□ 0.54
LDB2O43679 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LDB2O43679 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB2O43679 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB2O43679 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.45■□□□□ 0.54
LDB2O43679 ABALON-201ENST00000629058 1903 ntBASIC18.45■□□□□ 0.54
LDB2O43679 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.45■□□□□ 0.54
LDB2O43679 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LDB2O43679 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB2O43679 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.44■□□□□ 0.54
LDB2O43679 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.44■□□□□ 0.54
LDB2O43679 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.44■□□□□ 0.54
LDB2O43679 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
LDB2O43679 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.44■□□□□ 0.54
LDB2O43679 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LDB2O43679 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB2O43679 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.44■□□□□ 0.54
LDB2O43679 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
LDB2O43679 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB2O43679 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.43■□□□□ 0.54
LDB2O43679 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LDB2O43679 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.43■□□□□ 0.54
LDB2O43679 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LDB2O43679 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB2O43679 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB2O43679 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 AC113347.1-201ENST00000413321 391 ntBASIC18.42■□□□□ 0.54
LDB2O43679 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 AC005363.2-201ENST00000618631 242 ntBASIC18.42■□□□□ 0.54
LDB2O43679 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.42■□□□□ 0.54
LDB2O43679 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LDB2O43679 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms