Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 RCC2P6-201ENST00000526625 1557 ntBASIC13.13□□□□□ -0.31
LINC01549A6NIU2 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 AC142381.2-201ENST00000566120 298 ntBASIC13.13□□□□□ -0.31
LINC01549A6NIU2 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 RAB43-208ENST00000615093 783 ntTSL 5 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 AC068587.9-201ENST00000641814 219 ntBASIC13.13□□□□□ -0.31
LINC01549A6NIU2 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.13□□□□□ -0.31
LINC01549A6NIU2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 GPX1P1-201ENST00000388829 606 ntBASIC13.12□□□□□ -0.31
LINC01549A6NIU2 PEMT-206ENST00000435340 960 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 AC005829.2-201ENST00000571422 1056 ntBASIC13.12□□□□□ -0.31
LINC01549A6NIU2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 AL023806.1-201ENST00000603994 1649 ntBASIC13.12□□□□□ -0.31
LINC01549A6NIU2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01549A6NIU2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms