Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AL163051.1-201ENST00000569214 1512 ntBASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 BICD1-207ENST00000551848 1962 ntBASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AC104390.1-201ENST00000555663 520 ntBASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 AC135050.7-201ENST00000624508 2218 ntBASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.16■□□□□ 0.66
AP4E1Q9UPM8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 AC010203.1-204ENST00000548782 407 ntBASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 NEK4P2-201ENST00000580004 1012 ntBASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 AC024243.1-201ENST00000609234 778 ntBASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP4E1Q9UPM8 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.14■□□□□ 0.66
AP4E1Q9UPM8 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
AP4E1Q9UPM8 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
AP4E1Q9UPM8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.14■□□□□ 0.66
AP4E1Q9UPM8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms