Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 AP001160.2-201ENST00000596071 487 ntBASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
SHROOM4Q9ULL8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
SHROOM4Q9ULL8 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC35.01■■■■□ 3.2
SHROOM4Q9ULL8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
SHROOM4Q9ULL8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
SHROOM4Q9ULL8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
SHROOM4Q9ULL8 HES2-202ENST00000377836 507 ntTSL 2 BASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 AC073648.2-201ENST00000510116 352 ntBASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC35.01■■■■□ 3.19
SHROOM4Q9ULL8 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SHROOM4Q9ULL8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 IRF8-202ENST00000562492 946 ntTSL 3 BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC34.99■■■■□ 3.19
SHROOM4Q9ULL8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 AC091607.1-201ENST00000490318 1060 ntBASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 AC008608.2-201ENST00000606089 416 ntBASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC34.98■■■■□ 3.19
SHROOM4Q9ULL8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 AC009065.1-201ENST00000564055 1225 ntBASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 PRKN-208ENST00000610470 531 ntTSL 2 BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 PRKN-209ENST00000612485 225 ntTSL 5 BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 AC114341.1-201ENST00000618070 349 ntBASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 GPX1P2-201ENST00000429271 606 ntBASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC34.97■■■■□ 3.19
SHROOM4Q9ULL8 Z98044.1-201ENST00000632503 1764 ntBASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 KRT89P-201ENST00000620027 1478 ntBASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 CCS-201ENST00000310190 942 ntTSL 5 BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 UPF3AP3-201ENST00000420996 769 ntBASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC34.96■■■■□ 3.19
SHROOM4Q9ULL8 AL049840.3-201ENST00000602669 611 ntBASIC34.96■■■■□ 3.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms