Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC23.7■■□□□ 1.39
SMC4Q9NTJ3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 KRT18P57-201ENST00000443599 1254 ntBASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 AL023973.1-201ENST00000624619 620 ntBASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC23.7■■□□□ 1.38
SMC4Q9NTJ3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 AC073508.3-201ENST00000619697 1419 ntBASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC4Q9NTJ3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 AC010240.3-201ENST00000607688 395 ntBASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC4Q9NTJ3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms