Protein–RNA interactions for Protein: Q9NR12

PDLIM7, PDZ and LIM domain protein 7, humanhuman

Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7Q9NR12 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
PDLIM7Q9NR12 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 Z98044.1-201ENST00000632503 1764 ntBASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 AC034236.2-201ENST00000606662 1610 ntBASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 AC092183.1-201ENST00000469884 875 ntBASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 AP003733.1-201ENST00000491725 852 ntBASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 KRT18P41-201ENST00000518924 1277 ntBASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 AC064862.7-201ENST00000604520 867 ntBASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PDLIM7Q9NR12 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.9
PDLIM7Q9NR12 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 AC104390.1-201ENST00000555663 520 ntBASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM7Q9NR12 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 KRT18P23-201ENST00000435622 1283 ntBASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 AL773604.1-201ENST00000617417 272 ntBASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM7Q9NR12 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 MIR1233-2-201ENST00000408138 82 ntBASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 MIR1233-1-201ENST00000408722 82 ntBASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 AC092865.5-201ENST00000545435 363 ntBASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PDLIM7Q9NR12 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms