Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 GAMT-205ENST00000640762 751 ntTSL 5 BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CHMP1AQ9HD42 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 Six3os1_6.1-201ENST00000620790 196 ntBASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 PRORSD1P-202ENST00000563365 2154 ntBASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.91■□□□□ 0.14
CHMP1AQ9HD42 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TSPY23P-201ENST00000440136 739 ntBASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 C1QL1P1-201ENST00000568105 661 ntBASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 HLA-A-209ENST00000638375 975 ntBASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms