Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 NOC2LP1-202ENST00000452600 2235 ntBASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CCSER1Q9C0I3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 AC009065.1-201ENST00000564055 1225 ntBASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.67■□□□□ 0.9
CCSER1Q9C0I3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 SLC25A3P1-201ENST00000443844 931 ntBASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCSER1Q9C0I3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC024243.1-201ENST00000609234 778 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC141257.4-201ENST00000634557 245 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC136944.6-201ENST00000634818 245 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC133561.5-201ENST00000635547 218 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC007613.1-201ENST00000572811 2597 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC099343.3-201ENST00000605834 2503 ntBASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.65■□□□□ 0.9
CCSER1Q9C0I3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.64■□□□□ 0.9
CCSER1Q9C0I3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.64■□□□□ 0.9
CCSER1Q9C0I3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
CCSER1Q9C0I3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CCSER1Q9C0I3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms