Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.33■□□□□ 0.53
VPS35Q96QK1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.33■□□□□ 0.53
VPS35Q96QK1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS35Q96QK1 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 AC092647.4-201ENST00000457211 535 ntBASIC18.33■□□□□ 0.52
VPS35Q96QK1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS35Q96QK1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS35Q96QK1 AL499627.1-201ENST00000569373 2188 ntBASIC18.32■□□□□ 0.52
VPS35Q96QK1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 AC004408.2-201ENST00000623613 2777 ntBASIC18.32■□□□□ 0.52
VPS35Q96QK1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 AC093503.3-201ENST00000624917 2352 ntBASIC18.32■□□□□ 0.52
VPS35Q96QK1 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 RASA4DP-201ENST00000460726 1199 ntBASIC18.32■□□□□ 0.52
VPS35Q96QK1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 AL590326.2-201ENST00000625139 305 ntBASIC18.32■□□□□ 0.52
VPS35Q96QK1 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 AL163051.1-201ENST00000569214 1512 ntBASIC18.32■□□□□ 0.52
VPS35Q96QK1 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS35Q96QK1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS35Q96QK1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS35Q96QK1 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS35Q96QK1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 SPDYE15P-201ENST00000424157 909 ntBASIC18.31■□□□□ 0.52
VPS35Q96QK1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS35Q96QK1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS35Q96QK1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS35Q96QK1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms