Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 RNA5SP419-201ENST00000515908 135 ntBASIC18.79■□□□□ 0.6
CHFRQ96EP1 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 AL671883.3-201ENST00000603274 991 ntBASIC18.79■□□□□ 0.6
CHFRQ96EP1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 AC004263.2-201ENST00000617183 678 ntBASIC18.79■□□□□ 0.6
CHFRQ96EP1 TP73-AS1-207ENST00000624167 988 ntBASIC18.79■□□□□ 0.6
CHFRQ96EP1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 AC099343.3-201ENST00000605834 2503 ntBASIC18.78■□□□□ 0.6
CHFRQ96EP1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 AC079776.4-201ENST00000511039 504 ntBASIC18.78■□□□□ 0.6
CHFRQ96EP1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 AC009065.1-201ENST00000564055 1225 ntBASIC18.78■□□□□ 0.6
CHFRQ96EP1 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CHFRQ96EP1 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 AL163051.1-201ENST00000569214 1512 ntBASIC18.78■□□□□ 0.6
CHFRQ96EP1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHFRQ96EP1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHFRQ96EP1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHFRQ96EP1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 NUS1P2-201ENST00000417358 873 ntBASIC18.77■□□□□ 0.6
CHFRQ96EP1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 BNIP3P18-201ENST00000593976 575 ntBASIC18.77■□□□□ 0.6
CHFRQ96EP1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CHFRQ96EP1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHFRQ96EP1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHFRQ96EP1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.77■□□□□ 0.59
CHFRQ96EP1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
CHFRQ96EP1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CHFRQ96EP1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 AL049812.1-201ENST00000432563 2267 ntBASIC18.76■□□□□ 0.59
CHFRQ96EP1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CHFRQ96EP1 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHFRQ96EP1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
CHFRQ96EP1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHFRQ96EP1 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CHFRQ96EP1 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CHFRQ96EP1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHFRQ96EP1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms