Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 UGT1A2P-201ENST00000454886 866 ntBASIC18.68■□□□□ 0.58
TTC28Q96AY4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 AC004817.3-201ENST00000602957 2129 ntBASIC18.68■□□□□ 0.58
TTC28Q96AY4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.67■□□□□ 0.58
TTC28Q96AY4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 AC007225.1-201ENST00000566331 1836 ntBASIC18.67■□□□□ 0.58
TTC28Q96AY4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 SDHAP1-207ENST00000440850 2000 ntBASIC18.67■□□□□ 0.58
TTC28Q96AY4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TTC28Q96AY4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.67■□□□□ 0.58
TTC28Q96AY4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 AC006333.2-201ENST00000607957 2099 ntBASIC18.66■□□□□ 0.58
TTC28Q96AY4 AC034236.2-201ENST00000606662 1610 ntBASIC18.66■□□□□ 0.58
TTC28Q96AY4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 AL589182.2-201ENST00000619332 1049 ntBASIC18.66■□□□□ 0.58
TTC28Q96AY4 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 AC125634.1-201ENST00000438758 1403 ntBASIC18.66■□□□□ 0.58
TTC28Q96AY4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
TTC28Q96AY4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.66■□□□□ 0.58
TTC28Q96AY4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TTC28Q96AY4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.65■□□□□ 0.58
TTC28Q96AY4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.65■□□□□ 0.58
TTC28Q96AY4 AL596325.1-201ENST00000563991 1082 ntBASIC18.65■□□□□ 0.58
TTC28Q96AY4 AL049796.1-201ENST00000565336 1766 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms