Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 TSPY20P-201ENST00000450910 630 ntBASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4AQ8WYN0 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 KRT18P41-201ENST00000518924 1277 ntBASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4AQ8WYN0 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 MFAP1P1-201ENST00000442257 1255 ntBASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 FAM201B-201ENST00000458407 597 ntBASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 SLC25A1P4-201ENST00000567977 778 ntBASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 ITM2C-210ENST00000620962 501 ntBASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 AC096733.2-201ENST00000609937 1394 ntBASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
ATG4AQ8WYN0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ATG4AQ8WYN0 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.14■□□□□ 0.66
ATG4AQ8WYN0 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms