Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 AL138966.2-201ENST00000621997 464 ntBASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 AC036111.1-201ENST00000533973 1582 ntBASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD3Q3KNS1 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 KRT18P41-201ENST00000518924 1277 ntBASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AC087388.1-201ENST00000571370 1112 ntBASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 AC034236.2-201ENST00000606662 1610 ntBASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
PTCHD3Q3KNS1 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 MYLKP1-201ENST00000509077 1580 ntBASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 AC141257.4-201ENST00000634557 245 ntBASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 AC136944.6-201ENST00000634818 245 ntBASIC18.04■□□□□ 0.48
PTCHD3Q3KNS1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms