Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 AC074051.2-201ENST00000565115 352 ntBASIC17.74■□□□□ 0.43
COL28A1Q2UY09 AC106730.1-201ENST00000566722 1090 ntBASIC17.74■□□□□ 0.43
COL28A1Q2UY09 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 MIR4674-201ENST00000582457 87 ntBASIC17.73■□□□□ 0.43
COL28A1Q2UY09 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 AL773604.1-201ENST00000617417 272 ntBASIC17.73■□□□□ 0.43
COL28A1Q2UY09 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL28A1Q2UY09 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 SAPCD2P3-201ENST00000455031 850 ntBASIC17.72■□□□□ 0.43
COL28A1Q2UY09 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 AC073648.2-201ENST00000510116 352 ntBASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 AC140113.2-201ENST00000604370 208 ntBASIC17.72■□□□□ 0.43
COL28A1Q2UY09 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL28A1Q2UY09 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 LINC01465-201ENST00000408887 1940 ntBASIC17.71■□□□□ 0.43
COL28A1Q2UY09 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 RNPS1P1-201ENST00000507437 918 ntBASIC17.71■□□□□ 0.43
COL28A1Q2UY09 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 AC099336.1-202ENST00000602961 463 ntBASIC17.71■□□□□ 0.43
COL28A1Q2UY09 AC024243.1-201ENST00000609234 778 ntBASIC17.71■□□□□ 0.43
COL28A1Q2UY09 AC055717.3-201ENST00000622967 595 ntBASIC17.71■□□□□ 0.43
COL28A1Q2UY09 TP73-AS1-207ENST00000624167 988 ntBASIC17.71■□□□□ 0.43
COL28A1Q2UY09 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms