Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.32□□□□□ -0.28
PRKDCP78527 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC13.31□□□□□ -0.28
PRKDCP78527 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.31□□□□□ -0.28
PRKDCP78527 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.31□□□□□ -0.28
PRKDCP78527 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.31□□□□□ -0.28
PRKDCP78527 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
PRKDCP78527 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.31□□□□□ -0.28
PRKDCP78527 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.31□□□□□ -0.28
PRKDCP78527 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC13.31□□□□□ -0.28
PRKDCP78527 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC13.31□□□□□ -0.28
PRKDCP78527 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
PRKDCP78527 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC13.31□□□□□ -0.28
PRKDCP78527 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.31□□□□□ -0.28
PRKDCP78527 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.31□□□□□ -0.28
PRKDCP78527 AP005018.1-201ENST00000525475 301 ntBASIC13.31□□□□□ -0.28
PRKDCP78527 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
PRKDCP78527 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC13.31□□□□□ -0.28
PRKDCP78527 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PRKDCP78527 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.3□□□□□ -0.28
PRKDCP78527 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 PMS2P4-201ENST00000412466 1052 ntBASIC13.3□□□□□ -0.28
PRKDCP78527 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.3□□□□□ -0.28
PRKDCP78527 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.3□□□□□ -0.28
PRKDCP78527 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.3□□□□□ -0.28
PRKDCP78527 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 AC092902.6-201ENST00000641783 218 ntBASIC13.3□□□□□ -0.28
PRKDCP78527 AL357033.4-201ENST00000617703 1807 ntBASIC13.3□□□□□ -0.28
PRKDCP78527 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
PRKDCP78527 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC13.3□□□□□ -0.28
PRKDCP78527 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.3□□□□□ -0.28
PRKDCP78527 RCC2P3-201ENST00000418112 1537 ntBASIC13.3□□□□□ -0.28
PRKDCP78527 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.3□□□□□ -0.28
PRKDCP78527 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PRKDCP78527 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 CEND1P1-201ENST00000451006 455 ntBASIC13.29□□□□□ -0.28
PRKDCP78527 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.29□□□□□ -0.28
PRKDCP78527 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.29□□□□□ -0.28
PRKDCP78527 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 AP002414.1-201ENST00000391405 1147 ntBASIC13.29□□□□□ -0.28
PRKDCP78527 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.29□□□□□ -0.28
PRKDCP78527 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms