Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
FOXA1P55317 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.91■□□□□ 0.46
FOXA1P55317 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
FOXA1P55317 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
FOXA1P55317 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
FOXA1P55317 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 MCCD1P1-208ENST00000445732 328 ntBASIC17.91■□□□□ 0.46
FOXA1P55317 NUDT16P1-203ENST00000513809 620 ntBASIC17.91■□□□□ 0.46
FOXA1P55317 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
FOXA1P55317 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.91■□□□□ 0.46
FOXA1P55317 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 KRT8P50-201ENST00000562022 1438 ntBASIC17.9■□□□□ 0.46
FOXA1P55317 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
FOXA1P55317 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
FOXA1P55317 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
FOXA1P55317 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
FOXA1P55317 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.9■□□□□ 0.46
FOXA1P55317 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.9■□□□□ 0.46
FOXA1P55317 MIR4674-201ENST00000582457 87 ntBASIC17.9■□□□□ 0.46
FOXA1P55317 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.9■□□□□ 0.46
FOXA1P55317 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
FOXA1P55317 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
FOXA1P55317 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.9■□□□□ 0.46
FOXA1P55317 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
FOXA1P55317 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA1P55317 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
FOXA1P55317 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.46
FOXA1P55317 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
FOXA1P55317 AL135905.2-201ENST00000584934 1404 ntBASIC17.89■□□□□ 0.46
FOXA1P55317 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
FOXA1P55317 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 AC142381.4-202ENST00000563973 229 ntBASIC17.89■□□□□ 0.45
FOXA1P55317 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 DGCR10-201ENST00000609839 495 ntBASIC17.89■□□□□ 0.45
FOXA1P55317 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 AC113410.3-201ENST00000623366 203 ntBASIC17.89■□□□□ 0.45
FOXA1P55317 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.89■□□□□ 0.45
FOXA1P55317 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
FOXA1P55317 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.89■□□□□ 0.45
FOXA1P55317 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.89■□□□□ 0.45
FOXA1P55317 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
FOXA1P55317 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA1P55317 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
FOXA1P55317 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
FOXA1P55317 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
FOXA1P55317 FZD10-202ENST00000539839 3282 ntBASIC17.89■□□□□ 0.45
FOXA1P55317 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.88■□□□□ 0.45
FOXA1P55317 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
FOXA1P55317 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms