Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC30.88■■■□□ 2.53
CUX1P39880 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC30.88■■■□□ 2.53
CUX1P39880 HOTTIP_1.1-201ENST00000620415 57 ntBASIC30.88■■■□□ 2.53
CUX1P39880 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
CUX1P39880 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC30.87■■■□□ 2.53
CUX1P39880 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 MIR940-201ENST00000401276 94 ntBASIC30.87■■■□□ 2.53
CUX1P39880 MED15P5-201ENST00000423150 992 ntBASIC30.87■■■□□ 2.53
CUX1P39880 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC30.87■■■□□ 2.53
CUX1P39880 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC30.87■■■□□ 2.53
CUX1P39880 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
CUX1P39880 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC30.87■■■□□ 2.53
CUX1P39880 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CUX1P39880 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
CUX1P39880 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC30.86■■■□□ 2.53
CUX1P39880 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC30.86■■■□□ 2.53
CUX1P39880 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
CUX1P39880 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC30.86■■■□□ 2.53
CUX1P39880 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC30.86■■■□□ 2.53
CUX1P39880 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC30.86■■■□□ 2.53
CUX1P39880 AL356488.2-201ENST00000602755 427 ntBASIC30.86■■■□□ 2.53
CUX1P39880 FAM197Y3-203ENST00000618346 717 ntBASIC30.86■■■□□ 2.53
CUX1P39880 SDHAP2-201ENST00000455183 2001 ntBASIC30.86■■■□□ 2.53
CUX1P39880 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC30.86■■■□□ 2.53
CUX1P39880 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CUX1P39880 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC30.85■■■□□ 2.53
CUX1P39880 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC30.85■■■□□ 2.53
CUX1P39880 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC30.85■■■□□ 2.53
CUX1P39880 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
CUX1P39880 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX1P39880 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX1P39880 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC30.85■■■□□ 2.53
CUX1P39880 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC30.85■■■□□ 2.53
CUX1P39880 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC30.85■■■□□ 2.53
CUX1P39880 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC30.85■■■□□ 2.53
CUX1P39880 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX1P39880 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX1P39880 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX1P39880 AL158211.5-201ENST00000623583 2518 ntBASIC30.85■■■□□ 2.53
CUX1P39880 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX1P39880 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC30.85■■■□□ 2.53
CUX1P39880 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC30.84■■■□□ 2.53
CUX1P39880 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC30.84■■■□□ 2.53
CUX1P39880 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC30.84■■■□□ 2.53
CUX1P39880 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC30.84■■■□□ 2.53
CUX1P39880 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC30.84■■■□□ 2.53
CUX1P39880 AC009533.2-201ENST00000543664 586 ntBASIC30.84■■■□□ 2.53
CUX1P39880 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC30.84■■■□□ 2.53
CUX1P39880 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX1P39880 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC30.84■■■□□ 2.53
CUX1P39880 GPX1P2-201ENST00000429271 606 ntBASIC30.83■■■□□ 2.53
CUX1P39880 ABCD1P5-201ENST00000445663 754 ntBASIC30.83■■■□□ 2.53
CUX1P39880 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX1P39880 Z83851.2-201ENST00000609564 659 ntBASIC30.83■■■□□ 2.53
CUX1P39880 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC30.83■■■□□ 2.53
CUX1P39880 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX1P39880 DANCR-204ENST00000444958 709 ntTSL 3 BASIC30.83■■■□□ 2.53
CUX1P39880 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CUX1P39880 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC30.83■■■□□ 2.53
CUX1P39880 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX1P39880 AC009154.2-201ENST00000621177 724 ntBASIC30.83■■■□□ 2.53
CUX1P39880 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
CUX1P39880 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC30.82■■■□□ 2.52
CUX1P39880 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CUX1P39880 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC30.82■■■□□ 2.52
CUX1P39880 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC30.82■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms