Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.45■□□□□ 0.7
BDNFP23560 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
BDNFP23560 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
BDNFP23560 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.45■□□□□ 0.7
BDNFP23560 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.45■□□□□ 0.7
BDNFP23560 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.45■□□□□ 0.7
BDNFP23560 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 AC093525.10-201ENST00000625130 1569 ntBASIC19.44■□□□□ 0.7
BDNFP23560 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
BDNFP23560 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.44■□□□□ 0.7
BDNFP23560 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.44■□□□□ 0.7
BDNFP23560 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 RNF126P1-202ENST00000569893 925 ntBASIC19.44■□□□□ 0.7
BDNFP23560 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
BDNFP23560 AC005082.1-201ENST00000413042 2259 ntBASIC19.44■□□□□ 0.7
BDNFP23560 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
BDNFP23560 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
BDNFP23560 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
BDNFP23560 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.43■□□□□ 0.7
BDNFP23560 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 CROCCP3-202ENST00000420820 1947 ntBASIC19.43■□□□□ 0.7
BDNFP23560 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 MIR149-201ENST00000384879 89 ntBASIC19.43■□□□□ 0.7
BDNFP23560 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.43■□□□□ 0.7
BDNFP23560 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.43■□□□□ 0.7
BDNFP23560 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.43■□□□□ 0.7
BDNFP23560 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.43■□□□□ 0.7
BDNFP23560 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
BDNFP23560 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 AC009102.3-201ENST00000623118 1491 ntBASIC19.42■□□□□ 0.7
BDNFP23560 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 AL031598.1-201ENST00000561511 1773 ntBASIC19.42■□□□□ 0.7
BDNFP23560 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.42■□□□□ 0.7
BDNFP23560 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
BDNFP23560 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.42■□□□□ 0.7
BDNFP23560 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.42■□□□□ 0.7
BDNFP23560 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
BDNFP23560 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.42■□□□□ 0.7
BDNFP23560 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.42■□□□□ 0.7
BDNFP23560 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
BDNFP23560 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BDNFP23560 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.41■□□□□ 0.7
BDNFP23560 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
BDNFP23560 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.41■□□□□ 0.7
BDNFP23560 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 KRT18P48-201ENST00000434763 852 ntBASIC19.41■□□□□ 0.7
BDNFP23560 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.41■□□□□ 0.7
BDNFP23560 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms