Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL4A1P02462 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL4A1P02462 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.57■■□□□ 1.2
COL4A1P02462 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL4A1P02462 LINC01126-201ENST00000623515 1646 ntBASIC22.56■■□□□ 1.2
COL4A1P02462 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.56■■□□□ 1.2
COL4A1P02462 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
COL4A1P02462 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 AC018712.1-201ENST00000455767 687 ntBASIC22.56■■□□□ 1.2
COL4A1P02462 AC079776.4-201ENST00000511039 504 ntBASIC22.56■■□□□ 1.2
COL4A1P02462 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC22.56■■□□□ 1.2
COL4A1P02462 AL049840.3-201ENST00000602669 611 ntBASIC22.56■■□□□ 1.2
COL4A1P02462 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC22.56■■□□□ 1.2
COL4A1P02462 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
COL4A1P02462 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.56■■□□□ 1.2
COL4A1P02462 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC22.56■■□□□ 1.2
COL4A1P02462 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
COL4A1P02462 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
COL4A1P02462 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A1P02462 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
COL4A1P02462 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.55■■□□□ 1.2
COL4A1P02462 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.55■■□□□ 1.2
COL4A1P02462 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC22.55■■□□□ 1.2
COL4A1P02462 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC22.55■■□□□ 1.2
COL4A1P02462 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC22.55■■□□□ 1.2
COL4A1P02462 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.55■■□□□ 1.2
COL4A1P02462 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
COL4A1P02462 AC009102.3-201ENST00000623118 1491 ntBASIC22.55■■□□□ 1.2
COL4A1P02462 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC22.55■■□□□ 1.2
COL4A1P02462 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC22.55■■□□□ 1.2
COL4A1P02462 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 PPIE-208ENST00000470213 927 ntTSL 3 BASIC22.55■■□□□ 1.2
COL4A1P02462 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC22.55■■□□□ 1.2
COL4A1P02462 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
COL4A1P02462 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A1P02462 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.54■■□□□ 1.2
COL4A1P02462 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC22.54■■□□□ 1.2
COL4A1P02462 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
COL4A1P02462 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 TPM1-218ENST00000559281 851 ntTSL 5 BASIC22.54■■□□□ 1.2
COL4A1P02462 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC22.54■■□□□ 1.2
COL4A1P02462 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A1P02462 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
COL4A1P02462 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC22.53■■□□□ 1.2
COL4A1P02462 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
COL4A1P02462 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
COL4A1P02462 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
COL4A1P02462 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
COL4A1P02462 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC22.53■■□□□ 1.2
COL4A1P02462 VENTXP7-201ENST00000475503 772 ntBASIC22.53■■□□□ 1.2
COL4A1P02462 PENK-208ENST00000523051 772 ntTSL 5 BASIC22.53■■□□□ 1.2
COL4A1P02462 AC009065.1-201ENST00000564055 1225 ntBASIC22.53■■□□□ 1.2
COL4A1P02462 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A1P02462 AC114341.1-201ENST00000618070 349 ntBASIC22.53■■□□□ 1.2
COL4A1P02462 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A1P02462 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A1P02462 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
COL4A1P02462 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A1P02462 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.52■■□□□ 1.2
COL4A1P02462 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A1P02462 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
COL4A1P02462 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
COL4A1P02462 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC22.52■■□□□ 1.2
COL4A1P02462 AC008608.2-201ENST00000606089 416 ntBASIC22.52■■□□□ 1.2
COL4A1P02462 AL138831.2-201ENST00000606564 490 ntBASIC22.52■■□□□ 1.2
COL4A1P02462 AP001269.4-201ENST00000609611 512 ntBASIC22.52■■□□□ 1.2
COL4A1P02462 IL9RP2-201ENST00000423948 1312 ntBASIC22.52■■□□□ 1.2
COL4A1P02462 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A1P02462 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A1P02462 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A1P02462 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A1P02462 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms