Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SHOX2O60902 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.53■□□□□ 0.56
SHOX2O60902 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.53■□□□□ 0.56
SHOX2O60902 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOX2O60902 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SHOX2O60902 CROCCP2-202ENST00000412962 2773 ntBASIC18.53■□□□□ 0.56
SHOX2O60902 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
SHOX2O60902 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.52■□□□□ 0.56
SHOX2O60902 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.52■□□□□ 0.56
SHOX2O60902 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SHOX2O60902 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.52■□□□□ 0.56
SHOX2O60902 YBX1P10-201ENST00000444752 975 ntBASIC18.52■□□□□ 0.56
SHOX2O60902 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.52■□□□□ 0.56
SHOX2O60902 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.52■□□□□ 0.56
SHOX2O60902 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHOX2O60902 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHOX2O60902 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.52■□□□□ 0.55
SHOX2O60902 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.51■□□□□ 0.55
SHOX2O60902 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SHOX2O60902 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.51■□□□□ 0.55
SHOX2O60902 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.51■□□□□ 0.55
SHOX2O60902 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.51■□□□□ 0.55
SHOX2O60902 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
SHOX2O60902 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.51■□□□□ 0.55
SHOX2O60902 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.51■□□□□ 0.55
SHOX2O60902 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.51■□□□□ 0.55
SHOX2O60902 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.51■□□□□ 0.55
SHOX2O60902 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.51■□□□□ 0.55
SHOX2O60902 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.51■□□□□ 0.55
SHOX2O60902 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SHOX2O60902 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SHOX2O60902 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SHOX2O60902 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.51■□□□□ 0.55
SHOX2O60902 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHOX2O60902 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.5■□□□□ 0.55
SHOX2O60902 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.5■□□□□ 0.55
SHOX2O60902 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.5■□□□□ 0.55
SHOX2O60902 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.5■□□□□ 0.55
SHOX2O60902 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.5■□□□□ 0.55
SHOX2O60902 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.5■□□□□ 0.55
SHOX2O60902 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SHOX2O60902 AC010536.3-201ENST00000620306 533 ntBASIC18.5■□□□□ 0.55
SHOX2O60902 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SHOX2O60902 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.5■□□□□ 0.55
SHOX2O60902 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHOX2O60902 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 KRT18P55-202ENST00000578578 1546 ntBASIC18.49■□□□□ 0.55
SHOX2O60902 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SHOX2O60902 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.49■□□□□ 0.55
SHOX2O60902 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SHOX2O60902 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms