Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HOXC11O43248 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC11O43248 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HOXC11O43248 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 AC009102.3-201ENST00000623118 1491 ntBASIC18.79■□□□□ 0.6
HOXC11O43248 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.79■□□□□ 0.6
HOXC11O43248 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC11O43248 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.79■□□□□ 0.6
HOXC11O43248 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HOXC11O43248 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC11O43248 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.79■□□□□ 0.6
HOXC11O43248 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
HOXC11O43248 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 AC008687.5-201ENST00000593746 558 ntBASIC18.79■□□□□ 0.6
HOXC11O43248 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.79■□□□□ 0.6
HOXC11O43248 IFNL4P1-201ENST00000607083 540 ntBASIC18.79■□□□□ 0.6
HOXC11O43248 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC11O43248 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HOXC11O43248 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC11O43248 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HOXC11O43248 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC11O43248 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 AC026471.1-201ENST00000564629 3026 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 AC112777.1-201ENST00000540175 1423 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC11O43248 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 AL845331.1-201ENST00000424978 1190 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 KRT17P6-201ENST00000453795 1220 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 FOSL1P1-201ENST00000511041 816 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXC11O43248 AC091304.2-201ENST00000564639 760 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 AC074051.2-201ENST00000565115 352 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC11O43248 AL732292.2-201ENST00000609649 430 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 AC124864.1-201ENST00000623408 392 ntBASIC18.78■□□□□ 0.6
HOXC11O43248 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HOXC11O43248 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC11O43248 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXC11O43248 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HOXC11O43248 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 AC246785.2-201ENST00000432512 513 ntBASIC18.77■□□□□ 0.6
HOXC11O43248 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 KRT18P31-201ENST00000506277 1292 ntBASIC18.77■□□□□ 0.6
HOXC11O43248 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXC11O43248 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms