Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RCC2P6-201ENST00000526625 1557 ntBASIC25.1■■□□□ 1.61
MSH5O43196 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
MSH5O43196 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC25.09■■□□□ 1.61
MSH5O43196 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC25.09■■□□□ 1.61
MSH5O43196 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH5O43196 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
MSH5O43196 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH5O43196 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 AC004918.3-201ENST00000602609 925 ntBASIC25.09■■□□□ 1.61
MSH5O43196 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC25.09■■□□□ 1.61
MSH5O43196 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH5O43196 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC25.09■■□□□ 1.61
MSH5O43196 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH5O43196 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MSH5O43196 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH5O43196 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH5O43196 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH5O43196 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH5O43196 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
MSH5O43196 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC25.08■■□□□ 1.61
MSH5O43196 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH5O43196 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH5O43196 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH5O43196 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC25.08■■□□□ 1.61
MSH5O43196 AC005324.2-201ENST00000433051 415 ntTSL 5 BASIC25.08■■□□□ 1.61
MSH5O43196 TUBB8P6-201ENST00000436895 1288 ntBASIC25.08■■□□□ 1.61
MSH5O43196 AC007663.1-201ENST00000438948 1240 ntBASIC25.08■■□□□ 1.61
MSH5O43196 RNFT1P2-201ENST00000443064 757 ntBASIC25.08■■□□□ 1.61
MSH5O43196 AL590004.3-201ENST00000450255 443 ntTSL 5 BASIC25.08■■□□□ 1.61
MSH5O43196 AC008040.2-201ENST00000461049 708 ntBASIC25.08■■□□□ 1.61
MSH5O43196 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH5O43196 AP005597.1-201ENST00000534192 802 ntBASIC25.08■■□□□ 1.61
MSH5O43196 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
MSH5O43196 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC25.08■■□□□ 1.61
MSH5O43196 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH5O43196 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
MSH5O43196 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
MSH5O43196 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MSH5O43196 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MSH5O43196 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.6
MSH5O43196 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MSH5O43196 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC25.07■■□□□ 1.6
MSH5O43196 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
MSH5O43196 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC25.07■■□□□ 1.6
MSH5O43196 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC25.07■■□□□ 1.6
MSH5O43196 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC25.07■■□□□ 1.6
MSH5O43196 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC25.07■■□□□ 1.6
MSH5O43196 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC25.07■■□□□ 1.6
MSH5O43196 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC25.07■■□□□ 1.6
MSH5O43196 AC069148.1-201ENST00000608741 768 ntBASIC25.07■■□□□ 1.6
MSH5O43196 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
MSH5O43196 AC012313.10-201ENST00000623509 926 ntBASIC25.07■■□□□ 1.6
MSH5O43196 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH5O43196 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
MSH5O43196 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
MSH5O43196 AC005332.1-201ENST00000577698 1310 ntBASIC25.07■■□□□ 1.6
MSH5O43196 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC25.07■■□□□ 1.6
MSH5O43196 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC25.07■■□□□ 1.6
MSH5O43196 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC25.07■■□□□ 1.6
MSH5O43196 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC25.06■■□□□ 1.6
MSH5O43196 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC25.06■■□□□ 1.6
MSH5O43196 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 AC004951.3-201ENST00000418645 1148 ntBASIC25.06■■□□□ 1.6
MSH5O43196 SLC25A1P2-201ENST00000430693 912 ntBASIC25.06■■□□□ 1.6
MSH5O43196 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 HOMER2P1-201ENST00000455653 964 ntBASIC25.06■■□□□ 1.6
MSH5O43196 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 MEF2C-AS1-206ENST00000511100 828 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH5O43196 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH5O43196 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
MSH5O43196 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC25.06■■□□□ 1.6
MSH5O43196 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms