Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM49D1C9J1S8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 AC004951.3-201ENST00000418645 1148 ntBASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM49D1C9J1S8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 SLC25A6P5-201ENST00000435663 894 ntBASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 AC110285.5-201ENST00000611501 352 ntBASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM49D1C9J1S8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 AC133681.1-201ENST00000465482 601 ntBASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 AP002982.1-201ENST00000492365 877 ntBASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 CKBP1-201ENST00000565489 1086 ntBASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM49D1C9J1S8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms