Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 NEFHP1-201ENST00000412845 2629 ntBASIC20.7■□□□□ 0.9
COL4A3BPQ9Y5P4 AC104581.1-202ENST00000635932 2618 ntBASIC20.7■□□□□ 0.9
COL4A3BPQ9Y5P4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3BPQ9Y5P4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A3BPQ9Y5P4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3BPQ9Y5P4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 AC009113.1-201ENST00000570267 2443 ntBASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3BPQ9Y5P4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3BPQ9Y5P4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 STARP1-201ENST00000397973 869 ntBASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 AC024243.1-201ENST00000609234 778 ntBASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
COL4A3BPQ9Y5P4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 AL671277.2-201ENST00000458060 996 ntBASIC20.66■□□□□ 0.9
COL4A3BPQ9Y5P4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms