Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 HBZP1-201ENST00000354915 429 ntBASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 AL121894.2-201ENST00000602977 491 ntBASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA3Q9Y5H0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 SPDYE13P-201ENST00000445314 798 ntBASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 RASA4DP-201ENST00000460726 1199 ntBASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA3Q9Y5H0 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA3Q9Y5H0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.46
PCDHGA3Q9Y5H0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHGA3Q9Y5H0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHGA3Q9Y5H0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA3Q9Y5H0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms