Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 ANO7L1-203ENST00000602586 1720 ntBASIC17.92■□□□□ 0.46
VPS4AQ9UN37 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 AC005082.1-201ENST00000413042 2259 ntBASIC17.92■□□□□ 0.46
VPS4AQ9UN37 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4AQ9UN37 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 AL121894.2-201ENST00000602977 491 ntBASIC17.91■□□□□ 0.46
VPS4AQ9UN37 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
VPS4AQ9UN37 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 TSPY14P-201ENST00000303979 915 ntBASIC17.9■□□□□ 0.46
VPS4AQ9UN37 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 AC063952.2-201ENST00000498792 1227 ntBASIC17.9■□□□□ 0.46
VPS4AQ9UN37 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.9■□□□□ 0.46
VPS4AQ9UN37 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VPS4AQ9UN37 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms