Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CLEC4GP1-201ENST00000596555 870 ntBASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAIPQ9BWF2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 PVRIG2P-201ENST00000435460 978 ntBASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 TSSC2-201ENST00000450217 709 ntBASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 BX276092.5-203ENST00000456199 560 ntBASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 KRT8P26-201ENST00000534154 1276 ntBASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TRAIPQ9BWF2 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 AC006333.2-201ENST00000607957 2099 ntBASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAIPQ9BWF2 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 AL450487.1-201ENST00000426799 995 ntBASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 MIR3180-1-201ENST00000580374 94 ntBASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 MIR3180-3-201ENST00000584616 94 ntBASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms