Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SNRNP40Q96DI7 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
SNRNP40Q96DI7 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SNRNP40Q96DI7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SNRNP40Q96DI7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SNRNP40Q96DI7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 KRT18P58-201ENST00000527480 1120 ntBASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 BNIP3P18-201ENST00000593976 575 ntBASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 AC148477.8-201ENST00000624298 468 ntBASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SNRNP40Q96DI7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 IRX1P1-201ENST00000438849 1838 ntBASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 AC093909.1-201ENST00000504731 1122 ntBASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 TREX1-205ENST00000625293 1783 ntBASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SNRNP40Q96DI7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 AC092865.5-201ENST00000545435 363 ntBASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SNRNP40Q96DI7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms