Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 GNAS-203ENST00000306120 1878 ntBASIC18.71■□□□□ 0.59
LRRC39Q96DD0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
LRRC39Q96DD0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
LRRC39Q96DD0 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 AC116562.2-201ENST00000507042 360 ntBASIC18.7■□□□□ 0.58
LRRC39Q96DD0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 AL359736.2-201ENST00000621992 437 ntBASIC18.7■□□□□ 0.58
LRRC39Q96DD0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRRC39Q96DD0 GPAT2P1-201ENST00000444924 1672 ntBASIC18.69■□□□□ 0.58
LRRC39Q96DD0 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 GMCL1P1-201ENST00000463439 1581 ntBASIC18.69■□□□□ 0.58
LRRC39Q96DD0 KRT8P50-201ENST00000562022 1438 ntBASIC18.69■□□□□ 0.58
LRRC39Q96DD0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 CD177P1-201ENST00000606252 935 ntBASIC18.69■□□□□ 0.58
LRRC39Q96DD0 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.69■□□□□ 0.58
LRRC39Q96DD0 BCL2-203ENST00000589955 5011 ntBASIC18.68■□□□□ 0.58
LRRC39Q96DD0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 REXO1L9P-201ENST00000604264 2108 ntBASIC18.68■□□□□ 0.58
LRRC39Q96DD0 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 FAM197Y1-201ENST00000421178 764 ntBASIC18.68■□□□□ 0.58
LRRC39Q96DD0 MFAP1P1-201ENST00000442257 1255 ntBASIC18.68■□□□□ 0.58
LRRC39Q96DD0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 MIR4651-201ENST00000582622 73 ntBASIC18.68■□□□□ 0.58
LRRC39Q96DD0 FAM197Y4-202ENST00000622692 608 ntBASIC18.68■□□□□ 0.58
LRRC39Q96DD0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRRC39Q96DD0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms