Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 AC069148.1-201ENST00000608741 768 ntBASIC17.18■□□□□ 0.34
BEST3Q8N1M1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
BEST3Q8N1M1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 AL645929.1-201ENST00000420084 975 ntBASIC17.17■□□□□ 0.34
BEST3Q8N1M1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
BEST3Q8N1M1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 MIR564-202ENST00000385049 94 ntBASIC17.16■□□□□ 0.34
BEST3Q8N1M1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 MIR3917-201ENST00000580971 93 ntBASIC17.16■□□□□ 0.34
BEST3Q8N1M1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.16■□□□□ 0.34
BEST3Q8N1M1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BEST3Q8N1M1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BEST3Q8N1M1 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms